J3_9H6Y_016

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9H6Y|1|2|U|1530, 9H6Y|1|2|G|1598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|C|1527
9H6Y|1|2|A|1528
9H6Y|1|2|C|1529
9H6Y|1|2|U|1530
9H6Y|1|2|G|1531
*
9H6Y|1|2|C|1592
9H6Y|1|2|G|1593
9H6Y|1|2|U|1594
9H6Y|1|2|G|1595
9H6Y|1|2|A|1596
9H6Y|1|2|U|1597
9H6Y|1|2|G|1598
9H6Y|1|2|G|1599
*
9H6Y|1|2|C|1630
9H6Y|1|2|G|1631
9H6Y|1|2|A|1632
9H6Y|1|2|G|1633

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein uS13

Chain V

Small ribosomal subunit protein eS19

Chain n

Small ribosomal subunit protein eS25