J3_9H74_016

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9H74|1|2|U|1530, 9H74|1|2|G|1598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H74|1|2|C|1527
9H74|1|2|A|1528
9H74|1|2|C|1529
9H74|1|2|U|1530
9H74|1|2|G|1531
*
9H74|1|2|C|1592
9H74|1|2|G|1593
9H74|1|2|U|1594
9H74|1|2|G|1595
9H74|1|2|A|1596
9H74|1|2|U|1597
9H74|1|2|G|1598
9H74|1|2|G|1599
*
9H74|1|2|C|1630
9H74|1|2|G|1631
9H74|1|2|A|1632
9H74|1|2|G|1633

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein S5

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19

Chain n

40S ribosomal protein S25