J3_9H9H_006

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9H9H|1|A|U|871, 9H9H|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H9H_006 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.1182

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9H9H|1|A|C|826
9H9H|1|A|U|827
9H9H|1|A|U|828
9H9H|1|A|G|829
*
9H9H|1|A|C|857
9H9H|1|A|G|858
9H9H|1|A|G|859
9H9H|1|A|A|860
9H9H|1|A|G|861
*
9H9H|1|A|C|868
9H9H|1|A|G|869
9H9H|1|A|U|870
9H9H|1|A|U|871
9H9H|1|A|A|872
9H9H|1|A|A|873
9H9H|1|A|G|874

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain H

Small ribosomal subunit protein uS8

Chain U

Small ribosomal subunit protein bS21