3D structure

PDB id
9H9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
9H9J|1|A|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9H9J_004 not in the Motif Atlas
Geometric match to J3_5J7L_051
Geometric discrepancy: 0.1075
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9H9J|1|A|C|586
9H9J|1|A|G|587
9H9J|1|A|G|588
*
9H9J|1|A|C|651
9H9J|1|A|U|652
9H9J|1|A|U|653
9H9J|1|A|G|654
9H9J|1|A|A|655
*
9H9J|1|A|U|751
9H9J|1|A|G|752
9H9J|1|A|A|753
9H9J|1|A|C|754
9H9J|1|A|G|755

Current chains

Chain A
16S RNA (1078-MER)

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain L
Small ribosomal subunit protein uS12
Chain O
Small ribosomal subunit protein uS15
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2354 s