J3_9H9K_005
3D structure
- PDB id
- 9H9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 3 (HEAD) 30S-tRNA-GE81112
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9H9K|1|1|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9H9K_005 not in the Motif Atlas
- Geometric match to J3_8B0X_029
- Geometric discrepancy: 0.0991
- The information below is about J3_8B0X_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9H9K|1|1|C|990
9H9K|1|1|U|991
9H9K|1|1|U|992
9H9K|1|1|G|993
9H9K|1|1|A|994
9H9K|1|1|C|995
9H9K|1|1|A|996
9H9K|1|1|U|997
*
9H9K|1|1|A|1044
9H9K|1|1|C|1045
9H9K|1|1|A|1046
9H9K|1|1|G|1047
*
9H9K|1|1|C|1210
9H9K|1|1|U|1211
9H9K|1|1|U|1212
9H9K|1|1|A|1213
9H9K|1|1|C|1214
9H9K|1|1|G|1215
Current chains
- Chain 1
- 16S RNA (456-MER)
Nearby chains
- Chain N
- Small ribosomal subunit protein uS14
Coloring options: