J3_9H9M_007
3D structure
- PDB id
- 9H9M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9H9M_007 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.1167
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9H9M|1|1|C|1063
9H9M|1|1|G|1064
9H9M|1|1|U|1065
9H9M|1|1|C|1066
9H9M|1|1|A|1067
9H9M|1|1|G|1068
*
9H9M|1|1|C|1107
9H9M|1|1|G|1108
9H9M|1|1|C|1109
9H9M|1|1|A|1110
9H9M|1|1|A|1111
9H9M|1|1|C|1112
9H9M|1|1|C|1113
*
9H9M|1|1|G|1187
9H9M|1|1|A|1188
9H9M|1|1|U|1189
9H9M|1|1|G|1190
9H9M|1|1|A|1191
9H9M|1|1|C|1192
9H9M|1|1|G|1193
Current chains
- Chain 1
- 16S RNA (1542-MER)
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain C
- Small ribosomal subunit protein uS3
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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