J3_9HA1_004

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9HA1|1|A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA1_004 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.2022

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9HA1|1|A|C|1298
9HA1|1|A|G|1299
9HA1|1|A|G|1300
9HA1|1|A|A|1301
9HA1|1|A|A|1302
9HA1|1|A|G|1303
*
9HA1|1|A|C|1625
9HA1|1|A|A|1626
9HA1|1|A|G|1627
*
9HA1|1|A|C|1639
9HA1|1|A|A|1640
9HA1|1|A|A|1641
9HA1|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains