J3_9HA4_011

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9HA4|1|A|U|2833, 9HA4|1|A|A|2835, 9HA4|1|A|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA4_011 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1986

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9HA4|1|A|G|2812
9HA4|1|A|A|2813
9HA4|1|A|A|2814
9HA4|1|A|C|2815
*
9HA4|1|A|G|2831
9HA4|1|A|U|2832
9HA4|1|A|U|2833
9HA4|1|A|G|2834
9HA4|1|A|A|2835
9HA4|1|A|U|2836
*
9HA4|1|A|A|2882
9HA4|1|A|A|2883
9HA4|1|A|U|2884
9HA4|1|A|G|2885
9HA4|1|A|A|2886
9HA4|1|A|A|2887
9HA4|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17