J3_9HA6_001
3D structure
- PDB id
- 9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mature 50S subunit supplemented with Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GC*GCGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HA6_001 not in the Motif Atlas
- Homologous match to J3_5J7L_036
- Geometric discrepancy: 0.1507
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
9HA6|1|A|G|30
9HA6|1|A|C|31
*
9HA6|1|A|G|474
9HA6|1|A|C|475
9HA6|1|A|G|476
9HA6|1|A|A|477
9HA6|1|A|A|478
9HA6|1|A|A|479
9HA6|1|A|A|480
9HA6|1|A|G|481
*
9HA6|1|A|C|509
9HA6|1|A|C|510
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein uL22
- Chain U
- Large ribosomal subunit protein uL24
- Chain y
- Apidaecins type 22
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