3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9HA6|1|A|U|34, 9HA6|1|A|U|448, 9HA6|1|A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9HA6_002 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1507
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9HA6|1|A|C|32
9HA6|1|A|C|33
9HA6|1|A|U|34
9HA6|1|A|G|35
*
9HA6|1|A|C|445
9HA6|1|A|G|446
9HA6|1|A|A|447
9HA6|1|A|U|448
9HA6|1|A|A|449
9HA6|1|A|G|450
9HA6|1|A|U|451
9HA6|1|A|G|452
9HA6|1|A|A|453
9HA6|1|A|A|454
9HA6|1|A|C|455
9HA6|1|A|C|456
9HA6|1|A|A|457
9HA6|1|A|G|458
9HA6|1|A|U|459
9HA6|1|A|A|460
9HA6|1|A|C|461
*
9HA6|1|A|G|468
9HA6|1|A|G|469
9HA6|1|A|A|470
9HA6|1|A|A|471
9HA6|1|A|A|472
9HA6|1|A|G|473

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL34
Chain E
Large ribosomal subunit protein uL4
Chain Q
Large ribosomal subunit protein bL20
Chain T
Large ribosomal subunit protein uL23
Chain z
Apidaecins type 22

Coloring options:


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