3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9HA6_006 not in the Motif Atlas
Homologous match to J3_9DFE_008
Geometric discrepancy: 0.1414
The information below is about J3_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

9HA6|1|A|C|698
9HA6|1|A|A|699
9HA6|1|A|G|700
*
9HA6|1|A|C|732
9HA6|1|A|G|733
9HA6|1|A|A|734
9HA6|1|A|A|735
9HA6|1|A|C|736
*
9HA6|1|A|G|760
9HA6|1|A|A|761
9HA6|1|A|U|762
9HA6|1|A|G|763

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2

Coloring options:


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