J3_9HA6_006
3D structure
- PDB id
- 9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mature 50S subunit supplemented with Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HA6_006 not in the Motif Atlas
- Homologous match to J3_9DFE_008
- Geometric discrepancy: 0.1414
- The information below is about J3_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9HA6|1|A|C|698
9HA6|1|A|A|699
9HA6|1|A|G|700
*
9HA6|1|A|C|732
9HA6|1|A|G|733
9HA6|1|A|A|734
9HA6|1|A|A|735
9HA6|1|A|C|736
*
9HA6|1|A|G|760
9HA6|1|A|A|761
9HA6|1|A|U|762
9HA6|1|A|G|763
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
Coloring options: