J3_9HAL_002

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9HAL|1|A|U|34, 9HAL|1|A|U|448, 9HAL|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HAL_002 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1466

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9HAL|1|A|C|32
9HAL|1|A|C|33
9HAL|1|A|U|34
9HAL|1|A|G|35
*
9HAL|1|A|C|445
9HAL|1|A|G|446
9HAL|1|A|A|447
9HAL|1|A|U|448
9HAL|1|A|A|449
9HAL|1|A|G|450
9HAL|1|A|U|451
9HAL|1|A|G|452
9HAL|1|A|A|453
9HAL|1|A|A|454
9HAL|1|A|C|455
9HAL|1|A|C|456
9HAL|1|A|A|457
9HAL|1|A|G|458
9HAL|1|A|U|459
9HAL|1|A|A|460
9HAL|1|A|C|461
*
9HAL|1|A|G|468
9HAL|1|A|G|469
9HAL|1|A|A|470
9HAL|1|A|A|471
9HAL|1|A|A|472
9HAL|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain Q

Large ribosomal subunit protein bL20