J3_9HAM_002

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9HAM|1|A|U|34, 9HAM|1|A|U|448, 9HAM|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HAM_002 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1516

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9HAM|1|A|C|32
9HAM|1|A|C|33
9HAM|1|A|U|34
9HAM|1|A|G|35
*
9HAM|1|A|C|445
9HAM|1|A|G|446
9HAM|1|A|A|447
9HAM|1|A|U|448
9HAM|1|A|A|449
9HAM|1|A|G|450
9HAM|1|A|U|451
9HAM|1|A|G|452
9HAM|1|A|A|453
9HAM|1|A|A|454
9HAM|1|A|C|455
9HAM|1|A|C|456
9HAM|1|A|A|457
9HAM|1|A|G|458
9HAM|1|A|U|459
9HAM|1|A|A|460
9HAM|1|A|C|461
*
9HAM|1|A|G|468
9HAM|1|A|G|469
9HAM|1|A|A|470
9HAM|1|A|A|471
9HAM|1|A|A|472
9HAM|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain Q

Large ribosomal subunit protein bL20