J3_9HAM_009

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9HAM|1|A|U|2833, 9HAM|1|A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HAM_009 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.2178

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9HAM|1|A|G|2812
9HAM|1|A|A|2813
9HAM|1|A|A|2814
9HAM|1|A|C|2815
*
9HAM|1|A|G|2831
9HAM|1|A|U|2832
9HAM|1|A|U|2833
9HAM|1|A|G|2834
9HAM|1|A|A|2835
9HAM|1|A|U|2836
*
9HAM|1|A|A|2882
9HAM|1|A|A|2883
9HAM|1|A|U|2884
9HAM|1|A|G|2885
9HAM|1|A|A|2886
9HAM|1|A|A|2887
9HAM|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17