J3_9HLZ_024
3D structure
- PDB id
- 9HLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGA*UUAGA*UGACA
- Length
- 13 nucleotides
- Bulged bases
- 9HLZ|1|r|A|716
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HLZ_024 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.2341
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9HLZ|1|r|U|696
9HLZ|1|r|G|697
9HLZ|1|r|A|698
*
9HLZ|1|r|U|714
9HLZ|1|r|U|715
9HLZ|1|r|A|716
9HLZ|1|r|G|717
9HLZ|1|r|A|718
*
9HLZ|1|r|U|816
9HLZ|1|r|G|817
9HLZ|1|r|A|818
9HLZ|1|r|C|819
9HLZ|1|r|A|820
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8m
- Chain L
- Small ribosomal subunit protein uS12m
- Chain O
- Small ribosomal subunit protein uS15m
- Chain Q
- Small ribosomal subunit protein uS17m
- Chain U
- Small ribosomal subunit protein mS23
- Chain V
- Small ribosomal subunit protein mS26
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