J3_9HLZ_030

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUG*CAG*CUUAUA

Length

13 nucleotides

Bulged bases

9HLZ|1|r|U|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HLZ_030 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.1804

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9HLZ|1|r|U|1055
9HLZ|1|r|U|1056
9HLZ|1|r|U|1057
9HLZ|1|r|G|1058
*
9HLZ|1|r|C|1092
9HLZ|1|r|A|1093
9HLZ|1|r|G|1094
*
9HLZ|1|r|C|1242
9HLZ|1|r|U|1243
9HLZ|1|r|U|1244
9HLZ|1|r|A|1245
9HLZ|1|r|U|1246
9HLZ|1|r|A|1247

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14m

Chain X

Small ribosomal subunit protein mS33