J3_9HM0_002

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUCUA*UAG*CUGG

Length

14 nucleotides

Bulged bases

9HM0|1|AA|U|595, 9HM0|1|AA|U|683, 9HM0|1|AA|G|684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HM0_002 not in the Motif Atlas

Geometric match to J3_9DFE_007

Geometric discrepancy: 0.1528

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|C|592
9HM0|1|AA|G|593
9HM0|1|AA|A|594
9HM0|1|AA|U|595
9HM0|1|AA|C|596
9HM0|1|AA|U|597
9HM0|1|AA|A|598
*
9HM0|1|AA|U|664
9HM0|1|AA|A|665
9HM0|1|AA|G|666
*
9HM0|1|AA|C|682
9HM0|1|AA|U|683
9HM0|1|AA|G|684
9HM0|1|AA|G|685

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain BB

Large ribosomal subunit protein uL2m

Chain YY

Large ribosomal subunit protein bL34m