J3_9HM0_015

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUA*UAA*UAUAAC

Length

12 nucleotides

Bulged bases

9HM0|1|AA|U|2600, 9HM0|1|AA|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HM0_015 not in the Motif Atlas

Homologous match to J3_7A0S_010

Geometric discrepancy: 0.4068

The information below is about J3_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|G|2445
9HM0|1|AA|U|2446
9HM0|1|AA|A|2447
*
9HM0|1|AA|U|2587
9HM0|1|AA|A|2588
9HM0|1|AA|A|2589
*
9HM0|1|AA|U|2598
9HM0|1|AA|A|2599
9HM0|1|AA|U|2600
9HM0|1|AA|A|2601
9HM0|1|AA|A|2602
9HM0|1|AA|C|2603

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain EE

Large ribosomal subunit protein uL5m

Chain KK

Large ribosomal subunit protein uL16m

Chain RR

Large ribosomal subunit protein bL27m