J3_9HM0_020
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AC*GGAAUAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HM0_020 not in the Motif Atlas
- Geometric match to J3_4LFB_010
- Geometric discrepancy: 0.1215
- The information below is about J3_4LFB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|A|53
9HM0|1|r|C|54
*
9HM0|1|r|G|365
9HM0|1|r|G|366
9HM0|1|r|A|367
9HM0|1|r|A|368
9HM0|1|r|U|369
9HM0|1|r|A|370
9HM0|1|r|U|371
*
9HM0|1|r|A|397
9HM0|1|r|G|398
9HM0|1|r|U|399
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain II
- Large ribosomal subunit protein uL14m
- Chain L
- Small ribosomal subunit protein uS12m
- Chain P
- Small ribosomal subunit protein bS16m
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