J3_9HM0_026
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAA*UAAA*UGAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9HM0|1|r|A|938
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HM0_026 not in the Motif Atlas
- Geometric match to J3_9AXU_014
- Geometric discrepancy: 0.218
- The information below is about J3_9AXU_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|C|891
9HM0|1|r|A|892
9HM0|1|r|A|893
*
9HM0|1|r|U|924
9HM0|1|r|A|925
9HM0|1|r|A|926
9HM0|1|r|A|927
*
9HM0|1|r|U|934
9HM0|1|r|G|935
9HM0|1|r|A|936
9HM0|1|r|A|937
9HM0|1|r|A|938
9HM0|1|r|G|939
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2m
- Chain E
- Small ribosomal subunit protein uS5m
- Chain H
- Small ribosomal subunit protein uS8m
- Chain U
- Small ribosomal subunit protein mS23
- Chain Z
- Small ribosomal subunit protein mS37
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