J3_9HM0_028
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GACUAACCUUAC*GGUAA
- Length
- 25 nucleotides
- Bulged bases
- 9HM0|1|r|C|1040, 9HM0|1|r|U|1041, 9HM0|1|r|A|1043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HM0_028 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.1864
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|U|1020
9HM0|1|r|U|1021
9HM0|1|r|U|1022
9HM0|1|r|A|1023
9HM0|1|r|A|1024
9HM0|1|r|U|1025
9HM0|1|r|U|1026
9HM0|1|r|C|1027
*
9HM0|1|r|G|1038
9HM0|1|r|A|1039
9HM0|1|r|C|1040
9HM0|1|r|U|1041
9HM0|1|r|A|1042
9HM0|1|r|A|1043
9HM0|1|r|C|1044
9HM0|1|r|C|1045
9HM0|1|r|U|1046
9HM0|1|r|U|1047
9HM0|1|r|A|1048
9HM0|1|r|C|1049
*
9HM0|1|r|G|1253
9HM0|1|r|G|1254
9HM0|1|r|U|1255
9HM0|1|r|A|1256
9HM0|1|r|A|1257
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS10m
- Chain M
- Small ribosomal subunit protein uS13m
- Chain N
- Small ribosomal subunit protein uS14m
- Chain S
- Small ribosomal subunit protein uS19m
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