J3_9HUQ_010

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9HUQ|1|b|A|1609, 9HUQ|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HUQ_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1783

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9HUQ|1|b|C|1306
9HUQ|1|b|A|1307
9HUQ|1|b|A|1308
9HUQ|1|b|G|1309
*
9HUQ|1|b|C|1605
9HUQ|1|b|C|1606
9HUQ|1|b|C|1607
9HUQ|1|b|A|1608
9HUQ|1|b|A|1609
9HUQ|1|b|A|1610
9HUQ|1|b|C|1611
*
9HUQ|1|b|G|1620
9HUQ|1|b|U|1621
9HUQ|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34