J3_9HY6_010

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9HY6|1|b|A|1609, 9HY6|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HY6_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1783

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9HY6|1|b|C|1306
9HY6|1|b|A|1307
9HY6|1|b|A|1308
9HY6|1|b|G|1309
*
9HY6|1|b|C|1605
9HY6|1|b|C|1606
9HY6|1|b|C|1607
9HY6|1|b|A|1608
9HY6|1|b|A|1609
9HY6|1|b|A|1610
9HY6|1|b|C|1611
*
9HY6|1|b|G|1620
9HY6|1|b|U|1621
9HY6|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34