J3_9HYM_010

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9HYM|1|b|A|1609, 9HYM|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HYM_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1783

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9HYM|1|b|C|1306
9HYM|1|b|A|1307
9HYM|1|b|A|1308
9HYM|1|b|G|1309
*
9HYM|1|b|C|1605
9HYM|1|b|C|1606
9HYM|1|b|C|1607
9HYM|1|b|A|1608
9HYM|1|b|A|1609
9HYM|1|b|A|1610
9HYM|1|b|C|1611
*
9HYM|1|b|G|1620
9HYM|1|b|U|1621
9HYM|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34