J3_9I3L_002

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I3L_002 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0451

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9I3L|1|b|G|30
9I3L|1|b|C|31
*
9I3L|1|b|G|474
9I3L|1|b|C|475
9I3L|1|b|G|476
9I3L|1|b|A|477
9I3L|1|b|A|478
9I3L|1|b|A|479
9I3L|1|b|A|480
9I3L|1|b|G|481
*
9I3L|1|b|C|509
9I3L|1|b|C|510

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL20

Chain u

Large ribosomal subunit protein uL24