J3_9I3L_010

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9I3L|1|b|A|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I3L_010 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1846

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9I3L|1|b|C|1300
9I3L|1|b|G|1301
9I3L|1|b|G|1302
9I3L|1|b|A|1303
9I3L|1|b|A|1304
9I3L|1|b|G|1305
*
9I3L|1|b|C|1627
9I3L|1|b|A|1628
9I3L|1|b|G|1629
*
9I3L|1|b|C|1641
9I3L|1|b|A|1642
9I3L|1|b|A|1643
9I3L|1|b|G|1644

Current chains

Chain b

23S rRNA

Nearby chains