J3_9I3L_013

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I3L_013 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1141

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9I3L|1|b|G|1426
9I3L|1|b|G|1427
9I3L|1|b|G|1428
9I3L|1|b|A|1429
9I3L|1|b|C|1430
9I3L|1|b|G|1431
*
9I3L|1|b|C|1566
9I3L|1|b|C|1567
*
9I3L|1|b|G|1570
9I3L|1|b|A|1571
9I3L|1|b|A|1572
9I3L|1|b|A|1573
9I3L|1|b|A|1574
9I3L|1|b|G|1575
9I3L|1|b|C|1576

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2