J3_9I3L_016
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 9I3L|1|b|U|2338, 9I3L|1|b|A|2340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I3L_016 not in the Motif Atlas
- Geometric match to J3_8B0X_022
- Geometric discrepancy: 0.0806
- The information below is about J3_8B0X_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9I3L|1|b|C|2299
9I3L|1|b|U|2300
9I3L|1|b|A|2301
*
9I3L|1|b|U|2325
9I3L|1|b|A|2326
9I3L|1|b|G|2327
*
9I3L|1|b|C|2336
9I3L|1|b|A|2337
9I3L|1|b|U|2338
9I3L|1|b|A|2339
9I3L|1|b|A|2340
9I3L|1|b|G|2341
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain o
- Large ribosomal subunit protein uL18
- Chain y
- Large ribosomal subunit protein bL27
Coloring options: