J3_9I5T_005

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAAC*GGGUAAUA*UG

Length

15 nucleotides

Bulged bases

9I5T|1|A|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5T_005 not in the Motif Atlas

Geometric match to J3_9DFE_005

Geometric discrepancy: 0.2054

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9I5T|1|A|C|247
9I5T|1|A|A|248
9I5T|1|A|A|249
9I5T|1|A|A|250
9I5T|1|A|C|251
*
9I5T|1|A|G|274
9I5T|1|A|G|275
9I5T|1|A|G|276
9I5T|1|A|U|277
9I5T|1|A|A|278
9I5T|1|A|A|279
9I5T|1|A|U|280
9I5T|1|A|A|281
*
9I5T|1|A|U|392
9I5T|1|A|G|393

Current chains

Chain A

23S rRNA

Nearby chains