J3_9I5T_007

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CGAAU*AAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5T_007 not in the Motif Atlas

Geometric match to J3_9E6Q_008

Geometric discrepancy: 0.0762

The information below is about J3_9E6Q_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9I5T|1|A|C|733
9I5T|1|A|A|734
9I5T|1|A|G|735
*
9I5T|1|A|C|767
9I5T|1|A|G|768
9I5T|1|A|A|769
9I5T|1|A|A|770
9I5T|1|A|U|771
*
9I5T|1|A|A|795
9I5T|1|A|A|796
9I5T|1|A|U|797
9I5T|1|A|G|798

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2