J3_9I5T_008

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAAG*UGG*UAAG

Length

13 nucleotides

Bulged bases

9I5T|1|A|A|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5T_008 not in the Motif Atlas

Geometric match to J3_7A0S_006

Geometric discrepancy: 0.1181

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9I5T|1|A|C|1327
9I5T|1|A|G|1328
9I5T|1|A|A|1329
9I5T|1|A|A|1330
9I5T|1|A|A|1331
9I5T|1|A|G|1332
*
9I5T|1|A|U|1661
9I5T|1|A|G|1662
9I5T|1|A|G|1663
*
9I5T|1|A|U|1675
9I5T|1|A|A|1676
9I5T|1|A|A|1677
9I5T|1|A|G|1678

Current chains

Chain A

23S rRNA

Nearby chains