J3_9I5T_009

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CGUAAAC*GUG

Length

14 nucleotides

Bulged bases

9I5T|1|A|U|1643, 9I5T|1|A|A|1645, 9I5T|1|A|A|1646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5T_009 not in the Motif Atlas

Geometric match to J3_9AXU_014

Geometric discrepancy: 0.1568

The information below is about J3_9AXU_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.2

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9I5T|1|A|C|1335
9I5T|1|A|A|1336
9I5T|1|A|A|1337
9I5T|1|A|G|1338
*
9I5T|1|A|C|1641
9I5T|1|A|G|1642
9I5T|1|A|U|1643
9I5T|1|A|A|1644
9I5T|1|A|A|1645
9I5T|1|A|A|1646
9I5T|1|A|C|1647
*
9I5T|1|A|G|1656
9I5T|1|A|U|1657
9I5T|1|A|G|1658

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34