J3_9I5T_011

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGACG*CC*GAAAACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5T_011 not in the Motif Atlas

Geometric match to J3_8B0X_035

Geometric discrepancy: 0.1151

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9I5T|1|A|G|1454
9I5T|1|A|U|1455
9I5T|1|A|G|1456
9I5T|1|A|A|1457
9I5T|1|A|C|1458
9I5T|1|A|G|1459
*
9I5T|1|A|C|1601
9I5T|1|A|C|1602
*
9I5T|1|A|G|1605
9I5T|1|A|A|1606
9I5T|1|A|A|1607
9I5T|1|A|A|1608
9I5T|1|A|A|1609
9I5T|1|A|C|1610
9I5T|1|A|C|1611

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2