J3_9I5T_013
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUC*GCAUAGUGAUCC*GCUCAAA
- Length
- 22 nucleotides
- Bulged bases
- 9I5T|1|A|A|2389, 9I5T|1|A|U|2391, 9I5T|1|A|A|2427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5T_013 not in the Motif Atlas
- Geometric match to J3_8B0X_036
- Geometric discrepancy: 0.0919
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9I5T|1|A|U|2283
9I5T|1|A|U|2284
9I5T|1|A|C|2285
*
9I5T|1|A|G|2385
9I5T|1|A|C|2386
9I5T|1|A|A|2387
9I5T|1|A|U|2388
9I5T|1|A|A|2389
9I5T|1|A|G|2390
9I5T|1|A|U|2391
9I5T|1|A|G|2392
9I5T|1|A|A|2393
9I5T|1|A|U|2394
9I5T|1|A|C|2395
9I5T|1|A|C|2396
*
9I5T|1|A|G|2422
9I5T|1|A|C|2423
9I5T|1|A|U|2424
9I5T|1|A|C|2425
9I5T|1|A|A|2426
9I5T|1|A|A|2427
9I5T|1|A|A|2428
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain O
- Large ribosomal subunit protein uL15
- Chain Z
- Large ribosomal subunit protein bL27
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