J3_9I5V_003
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9I5V|1|A|A|23, 9I5V|1|A|U|471, 9I5V|1|A|C|479
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_003 not in the Motif Atlas
- Geometric match to J3_8GLP_024
- Geometric discrepancy: 0.0614
- The information below is about J3_8GLP_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9I5V|1|A|C|21
9I5V|1|A|U|22
9I5V|1|A|A|23
9I5V|1|A|G|24
*
9I5V|1|A|C|468
9I5V|1|A|G|469
9I5V|1|A|A|470
9I5V|1|A|U|471
9I5V|1|A|A|472
9I5V|1|A|G|473
9I5V|1|A|U|474
9I5V|1|A|G|475
9I5V|1|A|A|476
9I5V|1|A|A|477
9I5V|1|A|C|478
9I5V|1|A|C|479
9I5V|1|A|A|480
9I5V|1|A|G|481
9I5V|1|A|U|482
9I5V|1|A|A|483
9I5V|1|A|C|484
*
9I5V|1|A|G|491
9I5V|1|A|G|492
9I5V|1|A|A|493
9I5V|1|A|A|494
9I5V|1|A|A|495
9I5V|1|A|G|496
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain F
- Large ribosomal subunit protein uL4
- Chain T
- Large ribosomal subunit protein bL20
- Chain W
- Large ribosomal subunit protein uL23
Coloring options: