J3_9I5V_005

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAAC*GGCCGAAGAG*CGUAU

Length

20 nucleotides

Bulged bases

9I5V|1|A|A|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5V_005 not in the Motif Atlas

Geometric match to J3_4WF9_015

Geometric discrepancy: 0.0985

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9I5V|1|A|A|315
9I5V|1|A|G|316
9I5V|1|A|A|317
9I5V|1|A|A|318
9I5V|1|A|C|319
*
9I5V|1|A|G|334
9I5V|1|A|G|335
9I5V|1|A|C|336
9I5V|1|A|C|337
9I5V|1|A|G|338
9I5V|1|A|A|339
9I5V|1|A|A|340
9I5V|1|A|G|341
9I5V|1|A|A|342
9I5V|1|A|G|343
*
9I5V|1|A|C|355
9I5V|1|A|G|356
9I5V|1|A|U|357
9I5V|1|A|A|358
9I5V|1|A|U|359

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4

Chain X

Large ribosomal subunit protein uL24