J3_9I5V_006

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGAAU*AAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5V_006 not in the Motif Atlas

Geometric match to J3_9E6Q_008

Geometric discrepancy: 0.07

The information below is about J3_9E6Q_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9I5V|1|A|C|733
9I5V|1|A|A|734
9I5V|1|A|G|735
*
9I5V|1|A|C|767
9I5V|1|A|G|768
9I5V|1|A|A|769
9I5V|1|A|A|770
9I5V|1|A|U|771
*
9I5V|1|A|A|795
9I5V|1|A|A|796
9I5V|1|A|U|797
9I5V|1|A|G|798

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2