J3_9I5V_013

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9I5V|1|A|A|2519, 9I5V|1|A|U|2520

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I5V_013 not in the Motif Atlas

Geometric match to J3_4WF9_009

Geometric discrepancy: 0.0826

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9I5V|1|A|C|2518
9I5V|1|A|A|2519
9I5V|1|A|U|2520
9I5V|1|A|C|2521
*
9I5V|1|A|G|2546
9I5V|1|A|U|2547
9I5V|1|A|U|2548
*
9I5V|1|A|A|2562
9I5V|1|A|U|2563
9I5V|1|A|U|2564
9I5V|1|A|A|2565
9I5V|1|A|A|2566
9I5V|1|A|A|2567
9I5V|1|A|G|2568

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL14