J3_9I5V_017
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCUUAAC*GAGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9I5V|1|a|U|48, 9I5V|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_017 not in the Motif Atlas
- Geometric match to J3_4LFB_014
- Geometric discrepancy: 0.1175
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.3
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|G|46
9I5V|1|a|C|47
9I5V|1|a|U|48
9I5V|1|a|U|49
9I5V|1|a|A|50
9I5V|1|a|A|51
9I5V|1|a|C|52
*
9I5V|1|a|G|364
9I5V|1|a|A|365
9I5V|1|a|G|366
9I5V|1|a|G|367
9I5V|1|a|A|368
9I5V|1|a|A|369
9I5V|1|a|U|370
9I5V|1|a|A|371
9I5V|1|a|U|372
*
9I5V|1|a|A|398
9I5V|1|a|G|399
9I5V|1|a|C|400
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein bS16
- Chain j
- Small ribosomal subunit protein uS12
Coloring options: