J3_9I5V_024
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 9I5V|1|a|U|1238, 9I5V|1|a|U|1299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I5V_024 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.1205
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.3
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|C|1235
9I5V|1|a|A|1236
9I5V|1|a|A|1237
9I5V|1|a|U|1238
9I5V|1|a|G|1239
*
9I5V|1|a|C|1293
9I5V|1|a|C|1294
9I5V|1|a|C|1295
9I5V|1|a|A|1296
9I5V|1|a|G|1297
9I5V|1|a|U|1298
9I5V|1|a|U|1299
9I5V|1|a|C|1300
*
9I5V|1|a|G|1331
9I5V|1|a|C|1332
9I5V|1|a|U|1333
9I5V|1|a|G|1334
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS13
- Chain m
- Small ribosomal subunit protein uS7
Coloring options: