J3_9I78_027
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9I78|1|L3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I78_027 not in the Motif Atlas
- Geometric match to J3_9AXU_026
- Geometric discrepancy: 0.0891
- The information below is about J3_9AXU_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9I78|1|L3|C|9
9I78|1|L3|C|10
9I78|1|L3|A|11
9I78|1|L3|U|12
9I78|1|L3|A|13
9I78|1|L3|C|14
*
9I78|1|L3|G|66
9I78|1|L3|G|67
*
9I78|1|L3|U|110
9I78|1|L3|G|111
Current chains
- Chain L3
- 5S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LJ
- Putative ribosomal protein
- Chain LT
- 60S ribosomal protein l21-like protein
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