J3_9I88_005

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9I88|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_005 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.1833

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9I88|1|A|C|272
9I88|1|A|A|273
9I88|1|A|A|274
9I88|1|A|A|275
9I88|1|A|C|276
*
9I88|1|A|G|295
9I88|1|A|G|296
9I88|1|A|G|297
9I88|1|A|U|298
9I88|1|A|U|299
9I88|1|A|G|300
9I88|1|A|U|301
9I88|1|A|A|302
*
9I88|1|A|U|415
9I88|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains