J3_9I88_006
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAAU*AAUCAAAGAA*UGUAG
- Length
- 20 nucleotides
- Bulged bases
- 9I88|1|A|A|364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_006 not in the Motif Atlas
- Geometric match to J3_9DFE_006
- Geometric discrepancy: 0.0814
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9I88|1|A|C|340
9I88|1|A|G|341
9I88|1|A|A|342
9I88|1|A|A|343
9I88|1|A|U|344
*
9I88|1|A|A|359
9I88|1|A|A|360
9I88|1|A|U|361
9I88|1|A|C|362
9I88|1|A|A|363
9I88|1|A|A|364
9I88|1|A|A|365
9I88|1|A|G|366
9I88|1|A|A|367
9I88|1|A|A|368
*
9I88|1|A|U|380
9I88|1|A|G|381
9I88|1|A|U|382
9I88|1|A|A|383
9I88|1|A|G|384
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL4
- Chain X
- Large ribosomal subunit protein uL24
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