J3_9I88_009

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

9I88|1|A|A|1128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_009 not in the Motif Atlas

Homologous match to J3_1MMS_002

Geometric discrepancy: 0.3516

The information below is about J3_1MMS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9I88|1|A|G|1099
9I88|1|A|G|1100
9I88|1|A|A|1101
*
9I88|1|A|U|1125
9I88|1|A|U|1126
9I88|1|A|U|1127
9I88|1|A|A|1128
9I88|1|A|A|1129
9I88|1|A|A|1130
9I88|1|A|G|1131
*
9I88|1|A|C|1146
9I88|1|A|A|1147
9I88|1|A|C|1148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36