J3_9I88_011

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9I88|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_011 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.0707

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9I88|1|A|C|1342
9I88|1|A|U|1343
9I88|1|A|A|1344
9I88|1|A|A|1345
9I88|1|A|G|1346
*
9I88|1|A|C|1649
9I88|1|A|G|1650
9I88|1|A|C|1651
9I88|1|A|A|1652
9I88|1|A|A|1653
9I88|1|A|A|1654
9I88|1|A|C|1655
*
9I88|1|A|G|1664
9I88|1|A|U|1665
9I88|1|A|A|1666
9I88|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34