J3_9I88_013

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_013 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.092

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9I88|1|A|G|1468
9I88|1|A|G|1469
9I88|1|A|G|1470
9I88|1|A|A|1471
9I88|1|A|C|1472
9I88|1|A|G|1473
*
9I88|1|A|C|1611
9I88|1|A|C|1612
*
9I88|1|A|G|1615
9I88|1|A|A|1616
9I88|1|A|A|1617
9I88|1|A|A|1618
9I88|1|A|A|1619
9I88|1|A|G|1620
9I88|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2