J3_9I88_027

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_027 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1201

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9I88|1|a|C|946
9I88|1|a|A|947
9I88|1|a|A|948
9I88|1|a|G|949
*
9I88|1|a|C|1355
9I88|1|a|U|1356
9I88|1|a|A|1357
9I88|1|a|G|1358
9I88|1|a|U|1359
9I88|1|a|A|1360
9I88|1|a|A|1361
*
9I88|1|a|U|1383
9I88|1|a|G|1384
9I88|1|a|A|1385
9I88|1|a|A|1386
9I88|1|a|U|1387
9I88|1|a|A|1388
9I88|1|a|C|1389
9I88|1|a|G|1390

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS7

Chain j

Small ribosomal subunit protein uS9