J3_9I88_029
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9I88|1|a|A|985, 9I88|1|a|G|986, 9I88|1|a|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_029 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0762
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9I88|1|a|U|965
9I88|1|a|U|966
9I88|1|a|U|967
9I88|1|a|A|968
9I88|1|a|A|969
9I88|1|a|U|970
9I88|1|a|U|971
9I88|1|a|C|972
*
9I88|1|a|G|983
9I88|1|a|A|984
9I88|1|a|A|985
9I88|1|a|G|986
9I88|1|a|A|987
9I88|1|a|A|988
9I88|1|a|C|989
9I88|1|a|C|990
9I88|1|a|U|991
9I88|1|a|U|992
9I88|1|a|A|993
9I88|1|a|C|994
*
9I88|1|a|G|1232
9I88|1|a|G|1233
9I88|1|a|C|1234
9I88|1|a|U|1235
9I88|1|a|A|1236
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain k
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS13
- Chain o
- Small ribosomal subunit protein uS14B
- Chain t
- Small ribosomal subunit protein uS19
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