J3_9I88_031

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

9I88|1|a|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I88_031 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1956

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9I88|1|a|C|1000
9I88|1|a|U|1001
9I88|1|a|U|1002
9I88|1|a|G|1003
9I88|1|a|A|1004
9I88|1|a|C|1005
9I88|1|a|A|1006
9I88|1|a|U|1007
*
9I88|1|a|A|1056
9I88|1|a|C|1057
9I88|1|a|A|1058
9I88|1|a|G|1059
*
9I88|1|a|C|1221
9I88|1|a|U|1222
9I88|1|a|U|1223
9I88|1|a|A|1224
9I88|1|a|U|1225
9I88|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

Small ribosomal subunit protein uS14B