J3_9I88_033
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I88_033 not in the Motif Atlas
- Homologous match to J3_6CZR_079
- Geometric discrepancy: 0.1704
- The information below is about J3_6CZR_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89145.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9I88|1|a|U|1085
9I88|1|a|G|1086
*
9I88|1|a|U|1095
9I88|1|a|G|1096
9I88|1|a|U|1097
9I88|1|a|U|1098
*
9I88|1|a|G|1111
9I88|1|a|C|1112
9I88|1|a|A|1113
9I88|1|a|A|1114
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS2
- Chain f
- Small ribosomal subunit protein uS5
Coloring options: